Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs138479608 chr12:56653914 G/C 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs138502968 chr2:24323106 A/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs138529886 chr12:53505014 T/C 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs138540086 chr12:56653294 G/A 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs138578576 chr22:50204808 CA/C 0.000162 176 25.77 23.88 15.18 KM Plot
PCPG rs138610644 chr14:74589604 A/AAAAAC 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs138944585 chr16:90111348 T/TAACTC 9.88E-9 175 25.77 20.2 6.62 KM Plot
PCPG rs138948373 chr2:176149228 T/TA 0.000139 175 25.28 28.47 6.62 KM Plot
PCPG rs139068486 chr2:136535235 T/A 3.13E-5 174 25.87 25.87 9.72 KM Plot
PCPG rs139146977 chr2:239088825 G/GAAAGAA 3.06E-5 171 28.95 18.2 13.22 KM Plot
PCPG rs139271236 chr7:105162336 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs139276547 chr13:37629133 A/G 0.000367 175 25.87 24.23 4.17 KM Plot
PCPG rs1393644 chr4:78956707 C/A 0 176 2.93 25.87 25.28 KM Plot
PCPG rs139479123 chr7:105164932 C/T 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs139483757 chr7:105165282 A/ACT 5.12E-5 178 20.2 29.43 2.28 KM Plot